BtaEX6098177 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025424 | NOTCH4
Description
notch 4 [Source:HGNC Symbol;Acc:HGNC:7884]
Coordinates
chr23:26997012-26998620:+
Coord C1 exon
chr23:26997012-26997159
Coord A exon
chr23:26997689-26997786
Coord C2 exon
chr23:26997931-26998620
Length
98 bp
Sequences
Splice sites
3' ss Seq
CCTCTCACGTGGTCCCCTAGGAA
3' ss Score
8.92
5' ss Seq
AGGGTTAGA
5' ss Score
1.78
Exon sequences
Seq C1 exon
CTCTTACTCCGCAGCAGACAGACTGCAGTGGATGCACGGACAGAGGATGGGACCACAGCCCTGATGCTGGCCGCCAGGCTGGCTGTCGAAGACCTGGTTGAAGAACTGATTGCAGCCCAAGCAGATGTGGGGGCCAGAGACAAATGGG
Seq A exon
GAAAAACAGCGCTGCACTGGGCCGCCGCCGTGAACAACGCCCGGGCCGCCCGCTCCCTTCTCCAGGCGGGAGCCGATAAAGACGCACAGGATGGCAGG
Seq C2 exon
GAGCAGACGCCGCTGTTCCTGGCGGCCCGAGAAGGGGCGATGGAGGTAGCTCAGCTGCTGCTGGGGCTGGGAGCCGCCCAAGGACTACGGGACCAGGCCGGCTTAACACCCGGAGACGTCGCCCGTCAGCGCAACCACTGGGATCTGCTGACGCTGCTGGAAGGGGCGGGGCCACCGGAGGCGCGTCACAAACCCACGCCGGGCCGCGGCGCCGGCACCTTCCAGCGCGCGCGGACCGCGTCCGGAAGCGTGCCCCCGCGTGGGGGCGGGGCTGTGCCGCGCTGCCGGACGCTGTCAGCCGGAGCCCGTCCGCAAGCCCGGACTTTGTCCGTAGACTTGGCCGCGCACGGGGGCGGGGCCTACTCGCACTGCCGGAGCCTATCGAAAGGAACAGGAGAAGGCCCGCCCCTCCGCGGCCGTAGGTTCTCAGCAGGCATGCGCGGGCCTCGGCCCAACCCTGCAATGGTGCGAGGAAGACCCGGGGTCTCGGCCGGGAGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025424-'31-39,'31-38,34-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.394 C2=0.747
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(16.3=30.0),PF127962=Ank_2=PU(58.7=88.0)
A:
PF127962=Ank_2=PD(40.0=90.9),PF0002325=Ank=PU(0.1=0.0)
C2:
PF0002325=Ank=PD(93.9=13.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTGGGGGCCAGAGACAAAT
R:
GTCAGCAGATCCCAGTGGTTG
Band lengths:
176-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]