MmuEX0032066 @ mm10
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
notch 4 [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34586945-34588503:+
Coord C1 exon
chr17:34586945-34587063
Coord A exon
chr17:34587182-34587214
Coord C2 exon
chr17:34587374-34588503
Length
33 bp
Sequences
Splice sites
3' ss Seq
CCGCCCGCTCTCTCCTCCAGGCT
3' ss Score
10.58
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GGGCAACACTTGCAGCCGACTGTCGGTTGCCAGGGCAACGCTTCCCGCCTCTGAAGAATCCAAGTAGCTCTCCCTTCCTCCCCCCACCACCAAGGCCAGAACCCGTGGGAAACTAAAAG
Seq A exon
GCTGGAGCGGATAAAGATGCCCAGGACAGTAGG
Seq C2 exon
GAACAGACGCCGCTTTTCCTGGCAGCGCGCGAAGGAGCCGTGGAGGTGGCGCAGCTGTTGCTGGAGCTCGGGGCGGCCCGGGGACTGCGAGACCAGGCCGGGCTGGCCCCAGGAGATGTGGCCCGCCAGCGCAGTCACTGGGACCTGCTAACGCTGCTGGAAGGGGCTGGACCGACTACGCAGGAGGCCCGTGCGCACGCACGCACCACGCCGGGGGGCGGGGCCGCGCCGCGCTGCCGGACGCTGTCTGCGGGAGCGCGCCCGCGCGGGGGCGGAGCCTGTCTGCAGGCTCGCACTTGGTCGGTGGACTTGGGAGCGCGCGGAGGGAAGGTGTATGCTCGCTGCCGGAGCCGATCTGGAAGCTGCGGAGGCCCCACCACGCGCGGCCGCAGGTTCTCCGCGGGCTCCCGTGGACGACGCGGGGCTAGGGCATCACAGGATGACTGGCCTCGCGACTGGGTGGCCCTGGAAGCCTGCGGCTCCGCCTGCAGTGCGCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'47-58,'47-57,48-58
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.424 C2=0.443
Domain overlap (PFAM):
C1:
NA
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCCGCCTCTGAAGAATC
R:
ACCTCCACGGCTCCTTCG
Band lengths:
127-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types