MmuEX0032066 @ mm9
Exon Skipping
Gene
ENSMUSG00000015468 | Notch4
Description
Notch gene homolog 4 (Drosophila) [Source:MGI Symbol;Acc:MGI:107471]
Coordinates
chr17:34723472-34725448:+
Coord C1 exon
chr17:34723472-34723619
Coord A exon
chr17:34724062-34724159
Coord C2 exon
chr17:34724319-34725448
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCCCACGTGGTACCCTAGGAA
3' ss Score
4.24
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTCCTATTGGCCAGCAGACAGACTACGGTGGACGCCCGCACAGAGGACGGGACTACACCTTTGATGCTGGCTGCCAGGCTGGCCGTGGAGGACCTGGTTGAAGAATTGATCGCAGCCCGAGCAGATGTAGGAGCCAGGGATAAAAGGG
Seq A exon
GAAAAACTGCACTGCACTGGGCCGCTGCTGTGAACAACGCCCGAGCCGCCCGCTCTCTCCTCCAGGCTGGAGCGGATAAAGATGCCCAGGACAGTAGG
Seq C2 exon
GAACAGACGCCGCTTTTCCTGGCAGCGCGCGAAGGAGCCGTGGAGGTGGCGCAGCTGTTGCTGGAGCTCGGGGCGGCCCGGGGACTGCGAGACCAGGCCGGGCTGGCCCCAGGAGATGTGGCCCGCCAGCGCAGTCACTGGGACCTGCTAACGCTGCTGGAAGGGGCTGGACCGACTACGCAGGAGGCCCGTGCGCACGCACGCACCACGCCGGGGGGCGGGGCCGCGCCGCGCTGCCGGACGCTGTCTGCGGGAGCGCGCCCGCGCGGGGGCGGAGCCTGTCTGCAGGCTCGCACTTGGTCGGTGGACTTGGGAGCGCGCGGAGGGAAGGTGTATGCTCGCTGCCGGAGCCGATCTGGAAGCTGCGGAGGCCCCACCACGCGCGGCCGCAGGTTCTCCGCGGGCTCCCGTGGACGACGCGGGGCTAGGGCATCACAGGATGACTGGCCTCGCGACTGGGTGGCCCTGGAAGCCTGCGGCTCCGCCTGCAGTGCGCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015468-'36-38,'36-37,38-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.200 A=0.424 C2=0.443
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(15.8=30.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGTAGGAGCCAGGGAT
R:
GTTAGCAGGTCCCAGTGACTG
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types