RnoEX6061529 @ rn6
Exon Skipping
Gene
ENSRNOG00000000442 | Notch4
Description
notch 4 [Source:RGD Symbol;Acc:1303282]
Coordinates
chr20:4351866-4353785:+
Coord C1 exon
chr20:4351866-4352013
Coord A exon
chr20:4352456-4352553
Coord C2 exon
chr20:4352740-4353785
Length
98 bp
Sequences
Splice sites
3' ss Seq
GCTCCCACGTGGTACCCTAGGAA
3' ss Score
4.24
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
CTCCTATTGGCCAGCAGACAGACCGCTGTAGACGCGCGCACAGACGACGGGACTACACCTTTGATGCTGGCTGCCAGGTTGGCCGTGGAGGACCTGGTTGAAGAATTGATCGCAGCCCGAGCAGATGTAGGAGCCAGAGATAAAAGGG
Seq A exon
GAAAAACTGCACTGCACTGGGCCGCTGCAGTGAACAACGCCCGAGCTGCCCGCTGTCTCCTCCAGACTGGAGCGGATAAAGATGCCCAGGACAGTAGG
Seq C2 exon
GAGCAGACGCCGCTGTTCCTGGCTGCGCGCGAAGGCGCCGTGGAGGTGGCACAGCTGCTGCTGGAGATCGGGGCAGCGCGGGGGCTGCGGGACCAGGCCGGGCTGGCCCCAGCAGATGTGGCCCGCCAGCGTAGTCATTGGGACCTGCTGACGCTGCTGGAGGGGGCAGGACCGATCACGCAGGAGGCCCGTTCGCACGCACGCAACACGCCGGGGGGCGGGGCCGCGCCGCGCTGCCGGACGCTGTCTGCCGGAGCGCGCCCGCGCGGGGGCGGAGCTTGTCTGCAAGCTCGCACTTGGTCGGTGGACTTGGGAGCGCGCCGAGGGGCGGTATACGCGCGCTGCCGGAGCCGATCAGGAGGCTCTGGAGGCCCCTCCATGCGCGGCCGCAGGCTTTCCGCGGACTCCCGTGGACGACGCGGGGCTAGAGTATCACAGGATGACTGGCCTCGGGACTGGGTGGCCCTGGAAGCCTGCGGCTCTGCCTGCAGTGCGCCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000442-'32-46,'32-44,34-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=0.303 C2=0.532
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(13.8=26.0),PF127962=Ank_2=PU(31.2=58.0)
A:
PF127962=Ank_2=FE(34.4=100)
C2:
PF127962=Ank_2=PD(32.3=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCAGATGTAGGAGCCAGA
R:
CAGGTCCCAATGACTACGCTG
Band lengths:
178-276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]