BtaEX6099754 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000445 | PDE6C
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr26:14988062-15001642:+
Coord C1 exon
chr26:14988062-14988171
Coord A exon
chr26:14989827-14989914
Coord C2 exon
chr26:15001542-15001642
Length
88 bp
Sequences
Splice sites
3' ss Seq
AATGACCCTTTTCCTCCTAGGTC
3' ss Score
10.25
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACAGGAAGACTGAAGAAATACTACACAGACCTTGAAGCCTTTGCCATGCTTGCTGCTGCCTTCTGCCACGACATTGACCACAGAGGCACCAATAATTTGTATCAGATGAA
Seq A exon
GTCCACATCTCCGCTAGCAAGGCTTCACGGCTCTTCCATCTTGGAGAGGCACCACCTGGAGTACAGTAAGACGCTCCTGCAGGATGAG
Seq C2 exon
AGTTTAAACATATTCCAGAACCTAAATAAACGCCAGTATGAAACAGTTATTCATTTGTTTGAAGTTGCGATAATAGCGACTGACCTGGCTTTATATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000445-'22-28,'22-22,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTTGAAGCCTTTGCCA
R:
CCAGGTCAGTCGCTATTATCGC
Band lengths:
173-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]