HsaEX6089536 @ hg38
Exon Skipping
Gene
ENSG00000095464 | PDE6C
Description
phosphodiesterase 6C [Source:HGNC Symbol;Acc:HGNC:8787]
Coordinates
chr10:93640920-93655860:+
Coord C1 exon
chr10:93640920-93641029
Coord A exon
chr10:93645960-93646047
Coord C2 exon
chr10:93655760-93655860
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCATGTTGTTTTCCTTCTAGATC
3' ss Score
9.53
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
ACAGGAAGATTAAAGAAGTACTACACAGATCTCGAAGCCTTTGCCATGCTTGCTGCTGCTTTCTGCCATGATATTGACCACAGAGGCACCAATAATTTGTACCAGATGAA
Seq A exon
ATCCACGTCTCCATTAGCAAGACTTCATGGTTCTTCTATTTTGGAGAGGCACCACCTGGAGTACAGTAAGACTCTGTTGCAGGATGAG
Seq C2 exon
AGTTTAAACATCTTCCAGAACCTAAATAAGCGGCAGTTTGAAACAGTTATTCATTTGTTCGAGGTCGCAATAATAGCAACTGACCTGGCTTTATATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095464-'26-21,'26-17,27-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCTCGAAGCCTTTGCC
R:
GCCAGGTCAGTTGCTATTATTGC
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains