RnoEX6007210 @ rn6
Exon Skipping
Gene
ENSRNOG00000016593 | Pde6c
Description
phosphodiesterase 6C [Source:RGD Symbol;Acc:1309844]
Coordinates
chr1:256854410-256867094:+
Coord C1 exon
chr1:256854410-256854519
Coord A exon
chr1:256860829-256860916
Coord C2 exon
chr1:256866994-256867094
Length
88 bp
Sequences
Splice sites
3' ss Seq
CGTTATCCTCTTCTTCCTAGGTC
3' ss Score
9.67
5' ss Seq
GAGGTACGA
5' ss Score
8.65
Exon sequences
Seq C1 exon
ACTGGGAGACTAAAGAAATACTACACAGACCTCGAAGCTTTTGCCATGCTTGCTGCTGCCTTCTGCCATGACATTGACCACAGAGGAACCAATAACTTGTACCAAATGAA
Seq A exon
GTCCACATCTCCACTGGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG
Seq C2 exon
AGTTTAAACATCTTCCAGAATCTAAGCAAGCGGCAGTTTGAAACGGTGATCCACTTGTTTGAGGTTGCGATAATAGCAACTGACCTGGCACTCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016593-'15-17,'15-15,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGCCATGCTTGCTGCTG
R:
AGAGTGCCAGGTCAGTTGCTA
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]