DreEX6067654 @ danRer10
Exon Skipping
Gene
ENSDARG00000100397 | pde6c
Description
phosphodiesterase 6C, cGMP-specific, cone, alpha prime [Source:ZFIN;Acc:ZDB-GENE-040426-1664]
Coordinates
chr12:5112172-5112633:+
Coord C1 exon
chr12:5112172-5112281
Coord A exon
chr12:5112358-5112445
Coord C2 exon
chr12:5112533-5112633
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACAGTCTGTTTCCAATGCAGGAG
3' ss Score
8.56
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
ACCGGAAAGCTGAGAAGATACTACACAGATCTTGATGCCTTCGCGATGGTAGCGGCTGCATTCTGTCATGATATTGACCACAGGGGTACCAACAATCTCTACCAGACAAA
Seq A exon
GAGCGCATCACCTCTGGCCAAGCTTCACGGCTCCTCCATCCTGGAAAGGCACCATCTTCAATACAGCAAGAATCTGATGGCTGAAGAG
Seq C2 exon
AACGTTAACATCTTTCAAAGTCTGCAGAAACGCCAGTTCGAGACGGTCCAGCATTTGCATGATGTCTGCATCATTGCGACTGACCTGGCTTTGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100397-'14-14,'14-13,15-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGATCTTGATGCCTTCGCG
R:
ATACAAAGCCAGGTCAGTCGC
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]