GgaEX6040511 @ galGal3
Exon Skipping
Gene
ENSGALG00000006626 | PDE6C
Description
NA
Coordinates
chr6:21461689-21466311:-
Coord C1 exon
chr6:21466202-21466311
Coord A exon
chr6:21463577-21463664
Coord C2 exon
chr6:21461689-21461789
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATTACGTCTTTTTTTAACAGATC
3' ss Score
10.03
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
ACAGGTAGAATAAAGAAATACTACACTGATCTAGAAGCCTTTGCCATGGTTGCTGCTGCTTTCTGCCATGACATTGATCACAGAGGGACCAATAACTTGTATCAAATGAA
Seq A exon
ATCAGCTGCTCCACTAGCAAAGCTTCATGGCTCTTCCATTTTAGAAAGACATCACCTAGAGTACAGTAAAACCCTACTGCAAGATGAG
Seq C2 exon
AGTTTAAACATCTTCCAGAACCTAAATAAGCGCCAGTTTGAAACCGTTCTACACTTATTTGAAGTTGCAATAATAGCAACTGACTTGGCTTTGTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006626-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCCTTTGCCATGGTTGCT
R:
ACAAAGCCAAGTCAGTTGCTA
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]