MmuEX6032626 @ mm9
Exon Skipping
Gene
ENSMUSG00000024992 | Pde6c
Description
phosphodiesterase 6C, cGMP specific, cone, alpha prime [Source:MGI Symbol;Acc:MGI:105956]
Coordinates
chr19:38237251-38250225:+
Coord C1 exon
chr19:38237251-38237360
Coord A exon
chr19:38243867-38243954
Coord C2 exon
chr19:38250125-38250225
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTATCCTCTTCTTCCTAGGTC
3' ss Score
10.06
5' ss Seq
GAGGTACCA
5' ss Score
6.43
Exon sequences
Seq C1 exon
ACAGGAAGACTAAAGAAATACTATACAGACCTTGAAGCCTTTGCCATGCTCGCTGCTGCTTTCTGCCATGACATTGACCACAGAGGCACCAATAACTTGTACCAAATGAA
Seq A exon
GTCCACATCTCCACTTGCAAGGCTTCATGGGACTTCCATTTTAGAGCGACATCACCTGGAATATAGCAAGACTCTCTTGCAGGATGAG
Seq C2 exon
AGTTTAAACATCTTCCAGAATCTAAACAAGCGGCAGTTTGAAACGGTGATCCATTTGTTCGAGGTTGCAATAATAGCAACTGACCTGGCACTCTATTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024992-'15-15,'15-14,17-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0023314=PDEase_I=FE(14.5=100)
A:
PF0023314=PDEase_I=FE(11.6=100)
C2:
PF0023314=PDEase_I=FE(13.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACCTTGAAGCCTTTGCCA
R:
AGAGTGCCAGGTCAGTTGCTA
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: