BtaEX6100112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008102 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:HGNC:14882]
Coordinates
chr26:18908281-18920988:-
Coord C1 exon
chr26:18920832-18920988
Coord A exon
chr26:18911359-18911493
Coord C2 exon
chr26:18908281-18908426
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAGGTCAATGTCCTCCCCAGGGG
3' ss Score
5.53
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCTCCGGACGCTACTCCATCTACATCGCCAACTATGCCTACGGTAACGTGGGCCCTGACGCCCTCATCGAAATGGACCCCGAGGCCAGTGACCTCTCCCGGGGCATTCTGGCGCTCAGAGACGTGGCAGCTGAGGCTGGGGTCAGCAAATACACAG
Seq A exon
GGGGCCGGGGCGTCAGCGTGGGCCCCATCCTCAGCAGCAGTGCCTCGGATATCTTCTGCGACAATGAGAACGGGCCCAACTTCCTCTTCCACAACCGGGGTGACGGCACGTTCGTGGATGCTGCGGCCAGCGCTG
Seq C2 exon
GTGTGGACGACCCCCACCAGCACGGGCGTGGAGTCGCCCTGGCGGACTTCAACCGCGATGGCAAAGTGGACATCGTCTATGGCAACTGGAACGGCCCCCACCGCCTCTACCTGCAAATGAGTGCCCACGGGAAGGTCCGCTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008102-'5-9,'5-8,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.102
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(53.4=67.4)
C2:
PF135171=VCBS=PD(44.8=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCAACTATGCCTACGGTA
R:
CTCATTTGCAGGTAGAGGCGG
Band lengths:
253-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]