MmuEX0012781 @ mm9
Exon Skipping
Gene
ENSMUSG00000042401 | Crtac1
Description
cartilage acidic protein 1 [Source:MGI Symbol;Acc:MGI:1920082]
Coordinates
chr19:42379160-42393251:-
Coord C1 exon
chr19:42393095-42393251
Coord A exon
chr19:42383547-42383681
Coord C2 exon
chr19:42379160-42379305
Length
135 bp
Sequences
Splice sites
3' ss Seq
GGGTGCTCCTCTTCTCCTAGCGG
3' ss Score
6.23
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCTCTGGAAGATACTCTATCTACATAGCCAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTGGCACTCAGGGACGTGGCGGCTGAGGCTGGGGTCAGCAAGTACACAG
Seq A exon
CGGGCCGGGGTGTCAGCGTAGGCCCCATTCTCAGCAGCAGTGCCTCAGATATCTTCTGTGACAACGAGAACGGGCCCAACTTCCTCTTCCACAACCAAGGCAACGGTACCTTTGTGGATACTGCGGCCAGTGCCG
Seq C2 exon
GCGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTCTATGGCAACTGGAACGGCCCACATCGCCTCTATCTACAGATGAGTGCTCACGGGAAGGTCCGGTTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042401_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.143
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(53.4=67.4)
C2:
PF135171=VCBS=PD(44.8=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTGATGTGGGGCCTGAT
R:
CTTCCCGTGAGCACTCATCTG
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: