RnoEX0024646 @ rn6
Exon Skipping
Gene
ENSRNOG00000015220 | Crtac1
Description
cartilage acidic protein 1 [Source:RGD Symbol;Acc:621085]
Coordinates
chr1:261546308-261560719:-
Coord C1 exon
chr1:261560563-261560719
Coord A exon
chr1:261551235-261551369
Coord C2 exon
chr1:261546308-261546453
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTGGATTCACCTTTTCTAGCGG
3' ss Score
5.53
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGCTCCGGACGATATTCTATCTACATAGCGAACTATGCCTATGGTGATGTGGGGCCTGATGCCCTCATCGAAATGGACCCTGAGGCCAGTGACCTGTCCCGGGGGATCCTAGCACTCAGGGACGTGGCTGCTGAGGCTGGGGTCAGCAAGTACACAG
Seq A exon
CGGGCCGGGGTGTCAGCGTGGGCCCCATCCTCAGCAACAGTGCCTCAGATATCTTCTGTGACAATGAGAATGGGCCCAACTTCCTCTTCCACAACCAAGGCAATGGTACCTTCGTGGATGCTGCAGCTAGTGCCG
Seq C2 exon
GTGTAGACGACCCTCATCAGCATGGCCGAGGTGTGGCCCTGGCAGATTTCAACCGTGACGGCAAAGTAGACATCGTTTATGGCAACTGGAATGGCCCACACCGCCTCTATCTGCAGATGAGTGCTCACGGGAAGGTCCGATTTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015220-'13-11,'13-10,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.109 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(54.2=69.6)
C2:
PF135171=VCBS=PD(44.1=53.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTGATGTGGGGCCTGAT
R:
CTTCCCGTGAGCACTCATCTG
Band lengths:
252-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]