DreEX0024343 @ danRer10
Exon Skipping
Gene
ENSDARG00000102517 | crtac1b
Description
cartilage acidic protein 1b [Source:ZFIN;Acc:ZDB-GENE-090312-28]
Coordinates
chr13:39985172-39994362:-
Coord C1 exon
chr13:39994206-39994362
Coord A exon
chr13:39986029-39986163
Coord C2 exon
chr13:39985172-39985317
Length
135 bp
Sequences
Splice sites
3' ss Seq
ATCTCTGCTGTGTGTTAAAGGGG
3' ss Score
6.81
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GGTACAGGCCGTTACTCCATCTACATCGCCAACTATGCCAGCGGGACAGTAGGTCCACACGCTCTGATTGAAATGGATGAAAGTTCAAGTGACCCGTCCAAGGGAATTGTCGTGCTGTCCAATGTGGCCGAGCAGGCCGGAGTCAACAAGTTCACAG
Seq A exon
GGGGACGGGGGGTCGTGGTCGGCCCGATCCTCAGTCAGACCCTGCCCGATATCTTCTGCGACAACGAGTACAGTCCGAACTTCTTGTTTCGCAACAATGGAGACGGGACGTTCACTGATGTGGCGGCGCAAGTGG
Seq C2 exon
GAGTGGATGACCCGATGCAGCATGGCCGTGGAGTGGCGTTAGCAGATTTTAACCGGGATGGGAAGACAGACATTGTGTATGGAAATTGGAACGGGCCACATCGTCTGTTTCTGCAGCTCAGCAACAATCGCAAAAAAAGGTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102517-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.065 C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(54.2=69.6)
C2:
PF135171=VCBS=PD(44.1=53.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCGCCAACTATGCCAGC
R:
TGCAGAAACAGACGATGTGGC
Band lengths:
251-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]