GgaEX0025823 @ galGal4
Exon Skipping
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21826226-21827345:+
Coord C1 exon
chr6:21826226-21826382
Coord A exon
chr6:21826823-21826957
Coord C2 exon
chr6:21827200-21827345
Length
135 bp
Sequences
Splice sites
3' ss Seq
CCACTGGCTGCTGTCCCCAGGGG
3' ss Score
8.47
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGCTCGGGCAGGTACTCCATCTACATCGCCAACTACGCCAGCGGCAAGGTGGGCCCGCACGCCCTGCTGGAGATGGACGTGGCTGCTAGTGACCCTGCCCGTGGCATCGTAGTGCTGGTGGACGTGGCTGCCCAGGCTGGTGTCAGCAAGTACACAG
Seq A exon
GGGGCCGTGGTGTGGCTGTTGGCCCCATCTTGAGTGACAGTGCTTCTGACATCTTCTGTGGGAATGAGAACAGCCCCAACTTTCTCTTCCACAACCGTGGGGATGGGACATACCGCGACGTGGCAGCTGTGGTGG
Seq C2 exon
GGCTGGATGACCCCTACCAGCACGGGCGTGGAGTGGCATTGGCTGACTTCAACCGCGATGGCCGCGTGGACATCGTCTATGGCAACTGGAATGGGCCGCACCGCCTCTACCTGCAGGCAGGGGTCCCTGGGCGCGTCCGATTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(57.1=78.3)
C2:
PF135171=VCBS=PD(41.3=53.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGCAGGTACTCCATCTACA
R:
GGCCCATTCCAGTTGCCATAG
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]