HsaEX6089856 @ hg19
Exon Skipping
Gene
ENSG00000095713 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:14882]
Coordinates
chr10:99664426-99677413:-
Coord C1 exon
chr10:99677257-99677413
Coord A exon
chr10:99667770-99667904
Coord C2 exon
chr10:99664426-99664571
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGGGTCGATGTCTTTTCTAGGGG
3' ss Score
8.32
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GGCTCTGGACGCTACTCTATCTACATTGCCAATTACGCCTACGGTAATGTGGGCCCTGATGCCCTCATTGAAATGGACCCTGAGGCCAGTGACCTCTCCCGGGGCATTCTGGCGCTCAGAGATGTGGCTGCTGAGGCTGGGGTCAGCAAATATACAG
Seq A exon
GGGGCCGAGGCGTCAGCGTGGGCCCCATCCTCAGCAGCAGTGCCTCGGATATCTTCTGCGACAATGAGAATGGGCCTAACTTCCTTTTCCACAACCGGGGCGATGGCACCTTTGTGGACGCTGCGGCCAGTGCTG
Seq C2 exon
GTGTGGACGACCCCCACCAGCATGGGCGAGGTGTCGCCCTGGCTGACTTCAACCGTGATGGCAAAGTGGACATCGTCTATGGCAACTGGAATGGCCCCCACCGCCTCTATCTGCAAATGAGCACCCATGGGAAGGTCCGCTTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095713-'4-7,'4-6,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.087 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(53.4=67.4)
C2:
PF135171=VCBS=PD(44.8=53.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACGGTAATGTGGGCCCTGAT
R:
CCATGGGTGCTCATTTGCAGA
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)