DreEX6033886 @ danRer10
Exon Skipping
Gene
ENSDARG00000059826 | crtac1a
Description
cartilage acidic protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9704]
Coordinates
chr1:54264889-54266838:-
Coord C1 exon
chr1:54266682-54266838
Coord A exon
chr1:54265412-54265546
Coord C2 exon
chr1:54264889-54265025
Length
135 bp
Sequences
Splice sites
3' ss Seq
AAATCTGATGTCTTAATAAGGTG
3' ss Score
4.07
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGAACGGGTCGCTACTCGATTTACGTGGCGAACTACGCCAGTGGGAATGTGGGACCTCATGCGCTCATAGAGATGGATGAAGCCAGCAGTGATGTTGAAAAAGGCATCATTGCTCTGACTAATGTCGCACCACAAGTCAACGTCAATAAGTACACAG
Seq A exon
GTGGCCGTGGTGTAGTCGTCGGTCCCATCCTCAGCGATGCAAGATCTGACATTTTCTGCGACAATGAAAACGGGCCAAACTTTCTGTTCAAGAACAACGGAGACGGAAGCTTCAGCGACGTGGCGTCAGCGGCAG
Seq C2 exon
GAGTGGAGGACAGATATCAGCACGGGAGAGGAGTAGCGCTGGCCGACTTTAACGGCGACGGAAAGACGGATATAGTTTACGGCAACTGGAACGGCCCACACCGCCTGTACCTGCAGGACAGCCAGGAGAGATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059826-'7-6,'7-5,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF135171=VCBS=PU(48.4=65.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTACTCGATTTACGTGGC
R:
CCGTTCCAGTTGCCGTAAACT
Band lengths:
243-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]