BtaEX6100116 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008102 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:HGNC:14882]
Coordinates
chr26:18883567-18887586:-
Coord C1 exon
chr26:18887441-18887586
Coord A exon
chr26:18886089-18886131
Coord C2 exon
chr26:18883567-18883710
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCCCATCTTGCAGTGC
3' ss Score
7.65
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGAAGGATGAAGCCAGCAGCGTGGAGGTGACATGGCCAGATGGCAAGATGGCCAGCAGGAACGTGGCCAGCTCGGAGATGAACTCAGTGCTGGAGATTCCCTATCCCCGGGATGATGACAGACCTCAGGACCCAGCCAGCCTGGAG
Seq A exon
TGCGGCCAAGGATTCTCCCAGCAGGAAAATGGCCATTGTGCGG
Seq C2 exon
ACACCAACGAATGCATCCAGTTCCCGTTCGTGTGCCCTCGAGACAAGCCCGTGTGTGTCAACACGTACGGAAGCTACAGGTGCCGGACCAACAAGAGATGCAGTCGGGGCTATGAACCCAACGAGGACGGCACAGCCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008102-'18-21,'18-20,19-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.592 A=0.200 C2=0.102
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(41.2=57.1)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGACAGACCTCAGGACCCAG
R:
ATAGCCCCGACTGCATCTCTT
Band lengths:
145-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]