GgaEX0025822 @ galGal4
Exon Skipping
Gene
ENSGALG00000017378 | CRTAC1
Description
cartilage acidic protein 1 [Source:RefSeq peptide;Acc:NP_001073680]
Coordinates
chr6:21828810-21829499:+
Coord C1 exon
chr6:21828810-21828955
Coord A exon
chr6:21829056-21829098
Coord C2 exon
chr6:21829356-21829499
Length
43 bp
Sequences
Splice sites
3' ss Seq
CTGCTTCTCCCCAAACGCAGTGC
3' ss Score
5.97
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
GGCGTGATGAAGCCAGCAGCCTGGAGGTGACGTGGCCCGACGGCCGCGTCCTGGTGCGAGCGGTGGCCAGCAGCGAGACCAACTCCGTCCTGGAGGTCCCCTATCCCCGAGACACAGAGAAGCCACCAGCGCCCACCCTGCTGGAG
Seq A exon
TGCGGGCAGGGATTCTCCCAGCACGAGAACGGACGCTGCGTAG
Seq C2 exon
ACACCAACGAGTGTGCTGAGTTCCCCTTTGTCTGCCCCCGGGAGAAGCCCATCTGCATCAACACCTATGGCGGGTACCGCTGCCGCAGCAACAAGCGCTGCGCCCGTGGCTTCGAGCCCAATGAGGATGGCACAGCATGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017378_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(40.3=55.1)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCCTGGAGGTCCCCTATC
R:
CGCCATAGGTGTTGATGCAGA
Band lengths:
133-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]