RnoEX0024649 @ rn6
Exon Skipping
Gene
ENSRNOG00000015220 | Crtac1
Description
cartilage acidic protein 1 [Source:RGD Symbol;Acc:621085]
Coordinates
chr1:261528093-261531261:-
Coord C1 exon
chr1:261531116-261531261
Coord A exon
chr1:261530442-261530484
Coord C2 exon
chr1:261528093-261528236
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCCCACCTTGCAGTGC
3' ss Score
7.21
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAAGGGACGAAGCCAGCAGTGTAGAGGTGACGTGGCCAGATGGCAAGATGCTGAGCCGAAGTGTGGCCAACAGGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCGGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG
Seq A exon
TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG
Seq C2 exon
ACACCAATGAATGCATCCAGTTCCCATTTGTATGTCCTCGAGATAAACCCGTGTGCGTCAACACCTACGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAGTCGGGGCTATGAGCCCAACGAAGATGGCACAGCTTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015220_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.067 C2=0.137
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(45.2=67.3)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAACAGGGAGATGAACTCG
R:
GCACACGGGTTTATCTCGAGG
Band lengths:
137-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]