DreEX6062853 @ danRer10
Exon Skipping
Gene
ENSDARG00000102517 | crtac1b
Description
cartilage acidic protein 1b [Source:ZFIN;Acc:ZDB-GENE-090312-28]
Coordinates
chr13:39968487-39969991:-
Coord C1 exon
chr13:39969846-39969991
Coord A exon
chr13:39969725-39969767
Coord C2 exon
chr13:39968487-39968630
Length
43 bp
Sequences
Splice sites
3' ss Seq
AGTGCTGTTTCTTTTCACAGTGT
3' ss Score
8.55
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GGAAAGATGTGGCCACCAGTGTAGAAGTCTTCTGGCCAGATGGACGCTCTGTGGCCAGGCCTCTGGAACCCAGTGATATGAACAAAGTGATGGAGATCCATTACCCAGAGAATGAGGAAGAGGCAACCCCAGCGCTGGAGATCGAG
Seq A exon
TGTGGGCCAGGGTTTGAGCTCAATGAAAATGGCCGTTGCACTG
Seq C2 exon
ACCAAGACGAGTGCACACAGTTCCCATCCGTCTGTCCCTCAGAGCGACCCGTCTGCACCAACACCTATGGGAGCTTCAAGTGTCGTGCAAACAAGAGGTGTAACCAGGGATATGAGCCTAATGACGAAGGGACTGCATGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102517-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.378 A=0.000 C2=0.051
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(37.5=49.0)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGAGGAAGAGGCAACCCC
R:
ACACCTCTTGTTTGCACGACA
Band lengths:
138-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]