MmuEX0012780 @ mm10
Exon Skipping
Gene
ENSMUSG00000042401 | Crtac1
Description
cartilage acidic protein 1 [Source:MGI Symbol;Acc:MGI:1920082]
Coordinates
chr19:42284123-42287998:-
Coord C1 exon
chr19:42287853-42287998
Coord A exon
chr19:42287173-42287215
Coord C2 exon
chr19:42284123-42284266
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCCCACCTTGCAGTGC
3' ss Score
7.21
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GACGGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGAAGTGTGGCCAGCGAGGAGATGAACTCGGTGTTGGAGATCCTCTACCCCCAGGATGAGGACAAACTTCAGAACACAGCCCCACTAGAG
Seq A exon
TGCGGCCAAGGATTCTCCCAGCAGGACAATGGCCATTGCATGG
Seq C2 exon
ACACCAATGAATGCATCCAGTTCCCATTTGTGTGCCCTCGAGACAAACCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAATAAAAGATGCAATCGGGGCTATGAACCCAATGAAGACGGCACAGCCTGTGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042401_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.082 A=0.133 C2=0.216
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(42.9=61.2)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTTCAGAACACAGCCCCAC
R:
GGTTCATAGCCCCGATTGCAT
Band lengths:
144-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types