HsaEX0017325 @ hg19
Exon Skipping
Gene
ENSG00000095713 | CRTAC1
Description
cartilage acidic protein 1 [Source:HGNC Symbol;Acc:14882]
Coordinates
chr10:99640006-99644108:-
Coord C1 exon
chr10:99643963-99644108
Coord A exon
chr10:99642543-99642585
Coord C2 exon
chr10:99640006-99640149
Length
43 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGCCCACCTTACAGTGT
3' ss Score
6.93
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GGAAGGATGAAGCCAGCAGTGTGGAGGTGACGTGGCCAGATGGCAAGATGGTGAGCCGGAACGTGGCCAGCGGGGAGATGAACTCAGTGCTGGAGATCCTCTACCCCCGGGATGAGGACACACTTCAGGACCCAGCCCCACTGGAG
Seq A exon
TGTGGCCAAGGATTCTCCCAGCAGGAAAATGGCCATTGCATGG
Seq C2 exon
ACACCAATGAATGCATCCAGTTCCCATTCGTGTGCCCTCGAGACAAGCCCGTATGTGTCAACACCTATGGAAGCTACAGGTGCCGGACCAACAAGAAGTGCAGTCGGGGCTACGAGCCCAACGAGGATGGCACAGCCTGCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095713_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=0.044 C2=0.532
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(42.0=59.2)
A:
PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=95.9)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGATGGCAAGATGGTGAGCC
R:
ACACGAATGGGAACTGGATGC
Band lengths:
143-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)