DreEX6033890 @ danRer10
Exon Skipping
Gene
ENSDARG00000059826 | crtac1a
Description
cartilage acidic protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9704]
Coordinates
chr1:54256871-54258893:-
Coord C1 exon
chr1:54258748-54258893
Coord A exon
chr1:54258568-54258610
Coord C2 exon
chr1:54256871-54257227
Length
43 bp
Sequences
Splice sites
3' ss Seq
ACTGTGTTTGATGTTTGCAGTGT
3' ss Score
7.54
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
GGACTGATGAGGCCACCAGCATTGAAGTCTATTGGCCGGATGGTCGCTCCATTGCTCGACCACTTGAGTCAGCAGATATGAACACAGTCATTGAGATCGCATATCCTAATGAGGGGGAGGAGTCAGCGCTCACATCTGACACACAG
Seq A exon
TGTGGAGAGGGATTCACAGTCAACACCAACGGCCGCTGTACTG
Seq C2 exon
CGACAGCCTGAGTATTTTCAGCTGGACATAAAGTGTTTCCTCATCTTATTAAATCAGAGCTGCGCTGACAGACGTCACACTGATAATGAAGATCTTTAGATGCTAAATCTTCTGTTAGTAGATTAAACCTGTATATTTTGACTCAGCACATTTCCAAGGATAAAATATTATTAAAACACTAATTCTGAAAATGTTTACACGCACTTCTGCTGCTGTTTCTACTAGTTTAGAAAAACATTATGTTGAAAACCGGAAGTGTATGCAATAAAAATAAAGGATTTTGTTTTATTTTCACTTCAGTTGTTTTGTATGTGCATTGTCAAATTAAAGAAATAAAGGTTTAATTTACTCAAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059826-'16-16,'16-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.423 A=0.400 C2=0.286
Domain overlap (PFAM):
C1:
PF075937=UnbV_ASPIC=PD(42.9=61.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTATTGGCCGGATGGTCG
R:
AGCTGAAAATACTCAGGCTGTCG
Band lengths:
144-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]