BtaEX6100221 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000023941 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2312]
Coordinates
chr26:20835273-20844614:-
Coord C1 exon
chr26:20844503-20844614
Coord A exon
chr26:20836891-20837030
Coord C2 exon
chr26:20835273-20835372
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTCTCTTTCCCCTAGGAA
3' ss Score
13.38
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTGGCGAAGATCTACTCCTATGCACATGGATGGATGCACCAAGGTTGGAACTGTGGGGATTACTTCCCAGACGGCATCACCAATGGGGCTTCCTGGTATTCCCTCAGCAAGG
Seq A exon
GAATGCAAGACTTCAATTATCTCCATACCAATTGCTTTGAGATCACGCTGGAACTTAGTTGTGACAAGTTTCCGCTGCAAGGGGAATTACAGCGCGAGTGGCTGGGTAATAGGGAAGCCCTCATCCAATTCTTGGAACAG
Seq C2 exon
GTCCACCAGGGCATCAAGGGAATGGTGAGGGATGAGAATTATAATAATCTTGCGGATGCTGTCATTTCTGTCGGTGGGATTAATCATGATGTCACTTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000023941-'7-9,'7-8,8-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.3=100)
A:
PF0024619=Peptidase_M14=PD(13.0=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCGAAGATCTACTCCTATGCA
R:
CCGAAGTGACATCATGATTAATCCC
Band lengths:
211-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]