RnoEX6007474 @ rn6
Exon Skipping
Gene
ENSRNOG00000013439 | Cpn1
Description
carboxypeptidase N subunit 1 [Source:RGD Symbol;Acc:70931]
Coordinates
chr1:263742124-263747416:-
Coord C1 exon
chr1:263747305-263747416
Coord A exon
chr1:263744136-263744275
Coord C2 exon
chr1:263742124-263742223
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCTGCTGTCTCTTTCCCTAGGAA
3' ss Score
11.93
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGGCCAAGGTCTACTCCTACGCACATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAATGGGGCATCCTGGTATTCTCTAAGCAAGG
Seq A exon
GAATGCAAGACTTCAATTATCTCCATACCAACTGCTTTGAGATCACCCTAGAGCTGAGTTGCAACAAGTTTCCCCGGCAAGAAGAGCTGCAAAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG
Seq C2 exon
GTTCACCAGGGCATCAAGGGAATGGTGCTTGACGAGAACTATAACAACCTCACAGGGGCTGTCATTTCCGTCACCGGCATCAACCACGATGTCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013439-'4-5,'4-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.3=100)
A:
PF0024619=Peptidase_M14=PD(13.0=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGGTCTACTCCTACG
R:
CTGAAGTGACATCGTGGTTGA
Band lengths:
211-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]