DreEX0023940 @ danRer10
Exon Skipping
Gene
ENSDARG00000005185 | cpn1
Description
carboxypeptidase N, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9116]
Coordinates
chr12:31511002-31514548:+
Coord C1 exon
chr12:31511002-31511113
Coord A exon
chr12:31513025-31513164
Coord C2 exon
chr12:31514449-31514548
Length
140 bp
Sequences
Splice sites
3' ss Seq
ATTGCTTACTGTCTCTGAAGGGA
3' ss Score
6.46
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CTGGCAAAGACATACTCTTATGCCCACAGTTGGATGCACAAGGGCTGGAACTGTGGCGATTACTTTGATGAAGGAATCACAAACGGAGCCAGCTGGTACTCTCTGTCTAAGG
Seq A exon
GGATGCAGGATTTTAACTACCTCCACACGAACTGCTTTGAGATCACTCTGGAGCTCAGCTGTGATAAATTTCCTCCAGCGACGGCTCTCGCCAATGAATGGCTGGCCAACAGAGAGGCTCTAGTATCCTACATGGAGCAG
Seq C2 exon
GTGCACCATGGGATCAAAGGAATGGTTTATGATGAGAACAACAACGCAATTAGCAATGCAGTGATCTCTGTGGCAGGCATAAGCCATGATATCACCAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005185_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.4=100)
A:
PF0024619=Peptidase_M14=PD(13.1=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGACATACTCTTATGCCCA
R:
CGCTGGTGATATCATGGCTTA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]