GgaEX6040606 @ galGal4
Exon Skipping
Gene
ENSGALG00000007090 | CPN1
Description
carboxypeptidase N catalytic chain precursor [Source:RefSeq peptide;Acc:NP_001264183]
Coordinates
chr6:21587195-21587909:+
Coord C1 exon
chr6:21587195-21587306
Coord A exon
chr6:21587458-21587597
Coord C2 exon
chr6:21587810-21587909
Length
140 bp
Sequences
Splice sites
3' ss Seq
CACTGGCTCTCCTCTTCCAGGCA
3' ss Score
9.92
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
CTAGCCAAGACATACTCGTATGCCCATGGCTGGATGCACCGTGGCTGGAACTGTGGGGACTACTTTGTCGATGGCATCACCAACGGGGCATCTTGGTACTCGCTCAGCAAAG
Seq A exon
GCATGCAAGACTTCAATTACCTCTACACCAACTGCTTTGAGATCACCCTGGAGCTGAGCTGCAATAAATTTCCCCCCAAGGAGGACCTGGAGCGGCAGTGGATGGCCAACCGGGAGGCACTTGTTGCCTTCATTGAAGAG
Seq C2 exon
ATTCACCAAGGCATCAAAGGGATGGTTACAGACAAGAACAACAATGGCATTGCAGGAGCAGTGATTTCTGTCCAGGGAATCAGTCACGACGTCACCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007090-'11-6,'11-5,12-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.3=100)
A:
PF0024619=Peptidase_M14=PD(13.0=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGACATACTCGTATGCC
R:
CAGAGGTGACGTCGTGACTGA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]