MmuEX6033070 @ mm10
Exon Skipping
Gene
ENSMUSG00000025196 | Cpn1
Description
carboxypeptidase N, polypeptide 1 [Source:MGI Symbol;Acc:MGI:2135874]
Coordinates
chr19:43963731-43968564:-
Coord C1 exon
chr19:43968453-43968564
Coord A exon
chr19:43966175-43966314
Coord C2 exon
chr19:43963731-43963830
Length
140 bp
Sequences
Splice sites
3' ss Seq
GCCGCTGTCTCTTTCCCTAGGAA
3' ss Score
12.64
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CTGGCCAAGGTCTACTCCTACGCCCATGGATGGATGCACCAAGGTTGGAACTGTGGGGACTACTTTCCAGACGGCATCACCAACGGGGCGTCCTGGTATTCTCTCAGCAAGG
Seq A exon
GAATGCAAGACTTCAATTATCTCCACACTAACTGCTTTGAGATCACGCTCGAGCTGAGTTGCGACAAGTTTCCCCGGCAAGAGGAGCTGCAGAGGGAGTGGCTGGGTAACCGGGAAGCCTTAATCCAGTTCTTGGAACAG
Seq C2 exon
GTCCACCAGGGCATCAAGGGAATGGTGTTGGATGAGAACTCTAACAACCTCACGGGGGCTGTCATTTCCGTCACCGGCATCAACCACGACGTCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025196-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.010
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.3=100)
A:
PF0024619=Peptidase_M14=PD(13.0=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAAGGTCTACTCCTACG
R:
CTGAAGTGACGTCGTGGTTGA
Band lengths:
211-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types