HsaEX6089959 @ hg19
Exon Skipping
Gene
ENSG00000120054 | CPN1
Description
carboxypeptidase N, polypeptide 1 [Source:HGNC Symbol;Acc:2312]
Coordinates
chr10:101814104-101823482:-
Coord C1 exon
chr10:101823371-101823482
Coord A exon
chr10:101816770-101816909
Coord C2 exon
chr10:101814104-101814203
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGCTGCCCTCTTTCCCTTAGGAA
3' ss Score
11.48
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTGGCCAAGGTCTACTCCTATGCACATGGATGGATGTTCCAAGGTTGGAACTGCGGAGATTACTTCCCAGATGGCATCACCAATGGGGCTTCCTGGTATTCTCTCAGCAAGG
Seq A exon
GAATGCAAGACTTTAATTATCTCCATACCAACTGCTTTGAGATCACGCTGGAACTGAGTTGCGACAAGTTTCCCCCCGAAGAGGAGTTACAGCGGGAGTGGCTGGGTAATCGGGAAGCCCTAATCCAGTTCCTGGAACAG
Seq C2 exon
GTTCACCAGGGCATCAAGGGAATGGTGCTTGATGAGAATTACAATAATCTCGCCAATGCTGTCATTTCTGTCAGTGGGATTAACCATGATGTCACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120054-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0024619=Peptidase_M14=FE(12.3=100)
A:
PF0024619=Peptidase_M14=PD(13.0=83.0)
C2:
PF136201=CarboxypepD_reg=PU(39.5=88.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGGTCTACTCCTATGC
R:
CTGAAGTGACATCATGGTTAATCCCA
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)