BtaEX6100302 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018604 | SEMA4G
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G (SEMA4G), mRNA. [Source:RefSeq mRNA;Acc:NM_001101117]
Coordinates
chr26:21686714-21689561:+
Coord C1 exon
chr26:21686714-21686889
Coord A exon
chr26:21687089-21687150
Coord C2 exon
chr26:21688504-21689561
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCCCAATCCTCTGTCTCCAGGAC
3' ss Score
9.39
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CATAGCCTCTACGTGGGGGCCCCAAGTGGCATCATCCAGCTACCACTGTCCAGCTGCTCCCGCTACCGCTCCTGCTATGACTGCATCCTGGCCCGGGACCCCTACTGTGGCTGGGACCCCAGCACCCATGCCTGCATGGTGACCACCACCATAGCCAACAGGTCCCAAAGTAGCAG
Seq A exon
GACAGCACTCATACAGGACATGGAGAGAGGAAACCGAGGCTGCGAGGGCAACAGGGACACAG
Seq C2 exon
GGCCACCACCACCACTGAAGACCCGTTCTGTGCTCCGGGGTGATGATGTCCTATTGCCCTGTGACCAGCCATCCAACCTGGCCCGGGCCTTGTGGCTGCTCAATGGGAGCATGGGCCTGAGCGATGGGCAGGATGGCTACCGCGTGGGTGTGGATGGGCTGCTGGTAACAGACACGCAGCCTGAGCACAGCGGCAACTACGGCTGCTATGCTGAAGAGAACGGCCTCCGCACCCTGCTGGCCTCCTACAGCCTCACGGTGCGACCAGCCACTCCAGCCCCTGCTCCACAAGCCCCTGCCATGCCTGGGGCACAGCTGGCACCGGATGTGCGGCTGCTCTACGTGTTAGCCATTGCTGCACTTGGTGGCCTCTGCCTCATCCTGGCTTCCTCCCTCTTCTACGTGGCCTGTCTTCGGGGAGGTGGACGAGGGCACCGTCGAAAATACTCACTGGGTCGGGCCGGCCGGGCAGGGGGCTCTGCTGTGCAGCTGCAGACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018604-'22-23,'22-21,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.068 A=1.000 C2=0.511
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.9=69.5)
A:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
C2:
PF138951=Ig_2=WD(100=31.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGCTATGACTGCATCC
R:
GAGCACAGAACGGGTCTTCAG
Band lengths:
144-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]