MmuEX6033159 @ mm10
Exon Skipping
Gene
ENSMUSG00000025207 | Sema4g
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:MGI Symbol;Acc:MGI:1347047]
Coordinates
chr19:44998878-45003397:+
Coord C1 exon
chr19:44998878-44999038
Coord A exon
chr19:44999179-44999240
Coord C2 exon
chr19:45001168-45003397
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTTGATTTTCTTTCTGCAGGAC
3' ss Score
10.86
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CACAGCCTCTACGTGGGGGCTGCAAGTGGAGTCCTCCAGTTTCCTCTGTCCAGCTGCTCACGCTACCAGTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCATCCATGCCTGCATGGTGGCCACCACCGTAGCCAACAG
Seq A exon
GACAGAATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG
Seq C2 exon
GACCACCACCACCACTCAAGACCCGATCTGTGCTCCGGGGTGATGATGTCCTCCTGCCCTGTGACCAGCCGTCTAACCTGGCCCGGGCTTTGTGGCTACTCAATGGGAGCAAGAGCCTGAGCGATGGGCAGGATGGCTACCGCGTGGGAGTGGATGGGCTGCTGGTAACTGACACACAACTGGAGCACAGTGGCAACTATGGCTGCTATGCCGAGGAGAATGGCCTCCGTATGCTGCTGGCGTCCTACAGCCTCACAGTCCGGCCAGCCACCCCTGCTCCAGCTCCACAAGCCCCTGCCACACCTGGGGCACAGCTGGCACATGACATGAGGATGTTCTATGTGGTAGCCATTGCTATACTTGGTGGCCTCTGCCTCATCTTGGCATCTTCCCTCCTCTATGTGGCTTGTCTGAAGGGAGGCAGACGAGGTCGAAGACGAAAATACTCATTGGGTCGGGCTGGCCGGGCAGGGGGCTCGGCCGTGCAGCTGCAGACTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025207-'31-49,'31-43,34-49
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.409 C2=0.453
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(69.2=66.7)
A:
PF0143720=PSI=PD(28.8=68.2)
C2:
PF138951=Ig_2=WD(100=31.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACGCTACCAGTCCTGCTA
R:
GCACAGATCGGGTCTTGAGTG
Band lengths:
138-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types