GgaEX7006542 @ galGal4
Exon Skipping
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22627559-22628924:-
Coord C1 exon
chr6:22628773-22628924
Coord A exon
chr6:22628637-22628698
Coord C2 exon
chr6:22627559-22628412
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGAACCCCAGTGTCCCACAGCAC
3' ss Score
1.5
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
AGGAGCCTGTATGTGGGGGCTGCTAGCGGAGTCCTGCAGGTGCCCCTGGCCTCCTGCGCCAGGTACAGCTCCTGCTATGACTGCATCCTCGCCCGGGATCCCTACTGCGCCTGGGACGGCTGGGCCTGCCGTGACACGGCCAGCGGGGACAG
Seq A exon
CACAGGGCTGGTGCAGGATGTGCAGAGCGGCAATGTGGGATGTCGGAGCAGCTCTGGGCGTG
Seq C2 exon
CAGGCTCCCTGCCATGGAAGAACCGCACGGTGCTGCGCGGGGATGATGTGCTGCTGCCCTGTGACCAGCGCTCCAACTTGGCACGGGCTGTCTGGCTGCTGAATGGCAGCGAGGTGCCGGGCACGGGGCAGGAGCGGCTGCGCGTTGGGGTGGACGGGCTGCTGGTGACCAACACGCTGCCAGGACACAGCGGCGAGTACCGCTGCTATGGTGAGGAGCGGGGGTTGCGCACGCTGCTGGCTGCCTACAGCCTCACCGTGCTGCCCCAGCTGCCTCGTGCCGCCACCACCACCACCTCCGGGCCCATAGCGGCCAGCCAGGCTTCTGGAGACACCAAGGTGGTCTACGTGTCGGCTATCGTGGTGCTGGTGGTGCTGTGTGCCGTGCTGGGTACCGTCCTGCTCTACGTGTCCTGCCTGGAGAAGCGCAGGGGGAAGTACGTGCTGGGGGAGCCGCGGGCTGTGAGTCCCGAGCTGCAGACGGTGTCGGCCAGCTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957-'15-23,'15-21,17-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.045 C2=0.335
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(63.5=64.7)
A:
PF0143720=PSI=PD(34.6=81.8)
C2:
PF138951=Ig_2=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGCTATGACTGCATCC
R:
CAGCAGCACATCATCCCCG
Band lengths:
141-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]