RnoEX0079344 @ rn6
Exon Skipping
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264748414-264753397:+
Coord C1 exon
chr1:264748414-264748574
Coord A exon
chr1:264748715-264748776
Coord C2 exon
chr1:264751121-264753397
Length
62 bp
Sequences
Splice sites
3' ss Seq
TCTTGATTTTCTGTCTGCAGGAC
3' ss Score
10.59
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
CACAGCCTCTATGTGGGGGCTGCGAGTGGAGTCATCCAGTTTCCTCTGTCCAGTTGCTCACGCTACCGTTCCTGCTATGACTGCATCCTGGCACGGGACCCCTACTGTGGCTGGGACTCCAGCACCCATGCCTGCATGGTGGCCACCACCATAGCCAACAG
Seq A exon
GACAGCATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG
Seq C2 exon
GACCACCACCGCCATTCAAGACCCGATCTGTGCTCCGGGGTGATGATGTCCTCTTGCCCTGTGACCAGCCATCTAACCTGGCCCGGGCTTTGTGGCTCCTCAACGGGAGCAAGAGCCTGAGTGATGGGCAGGATGGCTACCGCGTGGGAGTGGATGGGCTGCTGGTAACAGACACACAACTGGAGCATAGTGGCAACTATGGCTGCTATGCTGAGGAGAACGGCCTCCGTATGCTGCTGGCTTCCTACAGCCTCATAGTCCGGCCAGCCACCCCTGCCCCAGCTCCACAAGCCCCTGCCACACCTGGGGCACAGCTGGCACATGACATGAGATTGTTCTATGTGGTAGCCATTGCTATACTTGGTGGCCTCTGCCTTATCTTGGCATCTTCCCTCCTCTATGTGGCTTGTCTGCGGGGAGGCAGACGAGGTCGAAGACGAAAATACTCATTGGGTCGGGCTGGCCGGGCAGGGGGCTCAGCCGTGCAGCTGCAGACTGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650-'20-28,'20-24,22-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.409
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(65.5=66.7)
A:
PF0143720=PSI=PD(32.7=81.8)
C2:
PF138951=Ig_2=WD(100=31.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGACTGCATCCTGGCACG
R:
GCAAGAGGACATCATCACCCC
Band lengths:
144-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]