DreEX6070273 @ danRer10
Exon Skipping
Gene
ENSDARG00000088143 | sema4gb
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Gb [Source:ZFIN;Acc:ZDB-GENE-111117-1]
Coordinates
chr12:33731906-33733929:-
Coord C1 exon
chr12:33733775-33733929
Coord A exon
chr12:33732250-33732311
Coord C2 exon
chr12:33731906-33732171
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGAATATGTGTTTCTCGCAGGTC
3' ss Score
10.17
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
AACAGTATCTATGTGAGCGGCGCTTCTGGACTGGTGCAGGTTCCTCTGTCATCTTGTGAACGCTACACCTCCTGTTACGACTGTGTGTTCGCACGCGATCCGCTCTGTGGCTGGGATGGAAGAATGTGTGCTGAGATAGCATCTTATGCTAACAG
Seq A exon
GTCCAGTCTCGTCCAGGACATCCAGATGGGAAGACGAGGCTGTTCTAATATCACAAGTGATG
Seq C2 exon
GTTTCGTCATGCACCGAACACGTGCGGTGATGGCAGGAGATGATGTGCTGCTACAATGCGAGATTCGATCAAACCTGGCCACCCCTCAATGGACGCTGAACAGTCAAGAACTGAAGGGTTATGGCGTAGATTCTGGCTACCGCACTGGCACAGACGGCCTCCTTATTATCGGTGCACAGAACCAACAAAGCGGACACTACCGATGTTATGCAGTGGAAAATAGCGTCTGGGTTCCTATTCGCAGTTACATTGTGAGAGTGCAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088143-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.240
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(68.0=65.4)
A:
PF0143720=PSI=PD(30.0=68.2)
C2:
PF138951=Ig_2=WD(100=97.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGGCTGGGATGGAAGAA
R:
GGTGGCCAGGTTTGATCGAAT
Band lengths:
135-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]