HsaEX6090026 @ hg19
Exon Skipping
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102740579-102744114:+
Coord C1 exon
chr10:102740579-102740754
Coord A exon
chr10:102740925-102740986
Coord C2 exon
chr10:102743062-102744114
Length
62 bp
Sequences
Splice sites
3' ss Seq
AACCTGATCTTCTGTCCCAGGAC
3' ss Score
8.33
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
CACAGCCTCTATGTGGGGGCTCCTAGCGGAGTCATCCAGCTACCACTCTCCAGCTGCTCCCGCTACCGATCCTGCTATGACTGCATCTTGGCCCGAGACCCCTACTGTGGCTGGGACCCTGGCACCCATGCCTGCGCAGCAGCCACCACCATAGCCAACAGGTCCCAGGGAAGCAG
Seq A exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
Seq C2 exon
GGCCACCACCACCACTGAAGACCCGCTCTGTGCTCCGGGGTGATGATGTCCTCCTGCCCTGTGACCAGCCATCCAACCTGGCCCGGGCCTTGTGGCTACTCAATGGGAGCATGGGCCTGAGCGATGGGCAGGGTGGCTACCGTGTGGGCGTGGACGGGCTGCTGGTTACAGATGCACAGCCTGAGCACAGTGGCAACTATGGCTGCTATGCCGAGGAAAATGGCCTCCGCACCCTGCTGGCCTCCTATAGTCTCACAGTCCGGCCAGCCACTCCTGCCCCAGCTCCAAAAGCCCCTGCCACACCTGGGGCACAGCTGGCACCTGATGTGAGACTGCTCTATGTGCTAGCCATTGCCGCGCTTGGTGGCCTCTGCCTCATCCTGGCCTCCTCCCTCCTCTATGTGGCCTGTCTGCGGGAAGGCAGACGAGGGCGCCGACGGAAATACTCACTGGGTCGGGCCAGCCGGGCAGGAGGATCTGCGGTGCAACTGCAGACAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-'20-21,'20-20,21-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.441
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(71.9=69.5)
A:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
C2:
PF138951=Ig_2=WD(100=31.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCACCATAGCCAACAGGTC
R:
CCATGCTCCCATTGAGTAGCC
Band lengths:
147-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)