DreEX0065105 @ danRer10
Exon Skipping
Gene
ENSDARG00000076595 | sema4ga
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4Ga [Source:ZFIN;Acc:ZDB-GENE-060503-381]
Coordinates
chr13:9423446-9428130:+
Coord C1 exon
chr13:9423446-9423600
Coord A exon
chr13:9425993-9426054
Coord C2 exon
chr13:9427034-9428130
Length
62 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCTTTCTATCTGCAGAGC
3' ss Score
12.13
5' ss Seq
ATGGTATGA
5' ss Score
6.56
Exon sequences
Seq C1 exon
ATGAGTGTGTATGTAGGTTCGCCCACCTCAGTGGTGCAGCTGCCCTTGTCCACTTGCACCAGATACTCCTCGTGCTTCGACTGCGTGATGGCACGTGATCCCTTCTGTGCCTGGGATGGACTGGAGTGTGTAGACATCACATCTCACAACAGCAG
Seq A exon
AGCCAATCTGACTCAGGATATTCAGAATGGAAACCAGGGCTGTGATAAATCCACAGCAGATG
Seq C2 exon
ATCAAGTGTTACACCGCTCTCGCTCTGTGATGGCTGGCGATGACGTTCTGCTTCAGTGTGAGCTCAGCTCCAATCTGGCAACCCCTGAGTGGACACTGAATGGAAATGAACTGAAAGGCTACGGACTGGACTCTGGTTTCCGTGTGGGCACTGACGGTCTTCTAGTCATCGAAGCCCAGCCTTACCAGAGTGGTGACTACTGCTGCTTTGCTATAGAGAACAGTGTCCGTGTTCCTGTGTTGATCTACAGCTTGACAGTTCGCCAAGAGCTTCCAGTGCCTCCTCCTGTAAAGCCAACACAACCACGCTTCACCACAGAAATCTATTGGACCAGTCAGTCTTCCCAAAGCGACTCCGAGGAAGACTTCGACCCCACCCCGATGTCTCCTCGCTTCGAGTTCCTGTCCGTGAGGAACATGGAGGCCATGTATCTATCCTTAATCACAATCCTAGGAGGCTTGTGTTTCGTTTTAACAGTCGTCCTGCTTTATGTGGGGTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076595-'14-22,'14-21,17-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.227 C2=0.263
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(68.0=65.4)
A:
PF0143720=PSI=PD(30.0=68.2)
C2:
PF138951=Ig_2=WD(100=28.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCACGTGATCCCTTCTG
R:
AGCTCACACTGAAGCAGAACG
Band lengths:
133-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]