Special

BtaEX6100480 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus cytochrome P450, subfamily XVII (CYP17A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174304]
Coordinates
chr26:23697895-23700404:-
Coord C1 exon
chr26:23700062-23700404
Coord A exon
chr26:23698325-23698463
Coord C2 exon
chr26:23697895-23698124
Length
139 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTCTGCTTTCCAAAGGCC
3' ss Score
9.28
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
AAGCCACTCCACAGCTCTTTGTCCTGACTGCTGCCACCCAGACACAATGTGGCTGCTCCTGGCTGTCTTTCTGCTCACCCTCGCCTATTTATTTTGGCCCAAGACCAAGCACTCTGGTGCCAAGTACCCCAGGAGCCTCCCATCCCTGCCCCTGGTGGGCAGCCTGCCGTTCCTCCCCAGACGTGGCCAGCAGCACAAGAACTTCTTCAAGCTGCAGGAAAAATATGGCCCCATCTATTCCTTTCGTTTGGGTTCCAAGACGACTGTGATGATTGGACACCACCAGTTGGCCAGGGAGGTGCTTCTCAAGAAGGGCAAGGAATTCTCTGGGCGTCCCAAAGTG
Seq A exon
GCCACTCTAGACATCCTGTCAGACAACCAAAAGGGCATTGCCTTTGCCGACCATGGTGCCCACTGGCAGCTGCATCGGAAGCTGGCACTGAATGCCTTTGCCCTGTTCAAGGATGGCAACCTGAAGTTAGAGAAGATCA
Seq C2 exon
TTAATCAGGAAGCCAATGTGCTCTGTGATTTCCTGGCCACCCAGCATGGAGAGGCCATAGATCTGTCCGAGCCTCTCTCTCTGGCGGTGACCAACATAATCAGCTTTATCTGCTTCAACTTCTCCTTCAAGAATGAGGATCCTGCCCTGAAGGCCATACAAAATGTCAATGATGGCATCCTGGAGGTTCTGAGCAAGGAAGTTCTGTTAGACATATTCCCTGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014335-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(15.2=71.7)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(16.3=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTGGGTTCCAAGACGACT
R:
CCTTCAGGGCAGGATCCTCAT
Band lengths:
252-391
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]