RnoEX0025791 @ rn6
Exon Skipping
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266425716-266428239:-
Coord C1 exon
chr1:266427818-266428239
Coord A exon
chr1:266426101-266426236
Coord C2 exon
chr1:266425716-266425945
Length
136 bp
Sequences
Splice sites
3' ss Seq
CCTTTGCCTGCTCTCCAAAGGTG
3' ss Score
9.15
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AAACTTCTTCAGGCCAAGAGATAACTCGACGTCAAGGTGACAATCAGAAACGCCCTTTAAAAGTCCTCCTTCTTGGTTGAAGTTGCTCCGCTCCACAGCTGGCCATCTGCCTACACCTGGCTGCCATGTGGGAACTTGTGGGTCTCTTGCTGCTCATCCTAGCCTATTTCTTTTGGGTCAAGTCAAAGACGCCCGGTGCCAAGCTCCCCAGGAGCCTTCCATCCCTGCCCCTGGTGGGCAGTCTGCCGTTTCTCCCCAGACGTGGTCATATGCATGTCAACTTCTTCAAGCTACAGGAAAAGTATGGTCCCATCTATTCTCTTCGCCTGGGTACCACAACTACAGTGATCATCGGCCACTATCAGCTGGCCAGGGAGGTGCTCATCAAGAAGGGAAAAGAATTCTCTGGTCGGCCCCAGATG
Seq A exon
GTGACTCAAAGCCTCTTGTCGGACCAAGGGAAAGGCGTGGCCTTTGCAGATGCTGGTAGCTCCTGGCACCTGCACCGGAAGTTGGTGTTCAGCACCTTTTCCCTGTTCAAGGATGGCCAGAAACTGGAGAAGCTAA
Seq C2 exon
TCTGTCAGGAAGCCAAGTCACTGTGTGATATGATGCTGGCACACGACAAGGAGTCCATAGACCTGTCCACGCCTATCTTCATGTCAGTAACCAACATCATCTGTGCTATCTGCTTCAACATCTCTTATGAGAAAAAGGATCCAAAACTGACCGCCATAAAGACCTTTACTGAGGGTATCGTGGATGCCACGGGCGACAGAAATCTGGTGGACATATTCCCATGGTTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.3=71.7)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCCCCAGACGTGGTCAT
R:
TAGGCGTGGACAGGTCTATGG
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]