MmuEX6033369 @ mm10
Exon Skipping
Gene
ENSMUSG00000003555 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88586]
Coordinates
chr19:46670538-46672974:-
Coord C1 exon
chr19:46672547-46672974
Coord A exon
chr19:46670957-46671092
Coord C2 exon
chr19:46670538-46670767
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCTTGCCTGCTCTCCAAAGGTG
3' ss Score
9.01
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
Exon sequences
Seq C1 exon
CTTCTGCAGGCCAAGAGATAACACGTCTTCAAGGTGACAATCAGAAACGCCTTTTAAAAGTTCTCCTTCTCTGCTGAAATTGCTGTAGCTTCTCCACTCCACAGCTGGCCATCTGCCTACACCTGGCTGCCATGTGGGAACTTGTGGGTCTCTTGCTGCTCATCCTGGCCTATTTCTTTTGGCCCAAGTCAAAGACACCTAATGCCAAGTTCCCCAGGAGCCTTCCATTCCTGCCCCTGGTGGGTAGTCTACCGTTTCTCCCCAGACGTGGTCATATGCATGCCAACTTCTTCAAGCTGCAGGAAAAGTATGGTCCCATCTATTCTCTTCGCCTGGGTACCACAACTGCAGTGATTGTCGGTCACTATCAGCTGGCCAGAGAAGTGCTCGTGAAGAAGGGGAAAGAATTCTCTGGTCGGCCCCAGATG
Seq A exon
GTGACTCTAGGCCTCTTGTCGGACCAAGGAAAAGGCGTCGCCTTTGCGGATAGTAGTAGCTCCTGGCAGCTGCACCGGAAGCTGGTATTCAGCACCTTTTCCCTGTTCAGGGATGACCAGAAACTGGAGAAGATGA
Seq C2 exon
TATGTCAGGAAGCCAACTCACTGTGTGACTTGATACTTACATACGACGGGGAGTCCCGAGATCTGTCTACGCTCATCTTCAAGTCAGTAATCAATATCATCTGTACCATCTGCTTCAACATCTCTTTTGAGAACAAGGATCCGATACTGACTACCATACAGACCTTTACAGAGGGTATTGTGGATGTCCTGGGCCACAGCGATCTGGTGGACATATTCCCGTGGTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003555-'0-3,'0-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(15.3=71.7)
A:
PF0006717=p450=FE(9.7=100)
C2:
PF0006717=p450=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCCCCAGACGTGGTCAT
R:
TGAGCGTAGACAGATCTCGGG
Band lengths:
249-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types