Special

DreEX6082551 @ danRer10

Exon Skipping

Gene
Description
cytochrome P450, family 17, subfamily A, polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-100822-1]
Coordinates
chr23:45830135-45831955:-
Coord C1 exon
chr23:45831824-45831955
Coord A exon
chr23:45831350-45831488
Coord C2 exon
chr23:45830135-45830364
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTCTGTGTGTGTGTGCAGGTG
3' ss Score
11.47
5' ss Seq
TCGGTAAAC
5' ss Score
4.93
Exon sequences
Seq C1 exon
CTGTCGTCTCAGTACGGGCCGCTGTTTGGGCTTTATGCCGGGCCGCACCTCACGCTGGTGGTCAGTGAGATCGGTCTGGTCAGAGAAGTGCTGCTGCAGCGGGGCAGAGAGTTCGCCGGACGGCCCAAGATG
Seq A exon
GTGACCACCGACCTGTTGACTCAGGGTGGGAAGGACATTGCGTTTGCAGACTACAGTCCACTGTGGAAGAACCACCGGCGTCTAGTGCACTCCTCGTTTACACTGTTCGGCGAGGGCTCAAATAAACTGCAGACCATCG
Seq C2 exon
TGCAGGAGGCGGCTGACAGTCTGTGTGAGGAGCTCCAGGCCTGCAGGGGTCAGAGTTCAGATCTGAGTGTGGTGTTGATGCGCGCCGTCACTAACGTGATCTGCAGGCTGGTGTTCAGCTCCTCCTATCAGCCCAGCGACCCCGAGCTGCAGACCGTCATACAGTACAACGACGGCATCGTGCAGACCATCGCCAGAGGGGGACTCGTGGACATCTTCCCCTGGTTAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053966-'4-7,'4-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=FE(9.4=100)
A:
PF0006717=p450=FE(10.1=100)
C2:
PF0006717=p450=FE(16.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTGGTCAGTGAGATCGGT
R:
CTGTATGACGGTCTGCAGCTC
Band lengths:
242-381
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]