Special

GgaEX6040824 @ galGal4

Exon Skipping

Gene
Description
steroid 17-alpha-hydroxylase/17,20 lyase precursor [Source:RefSeq peptide;Acc:NP_001001901]
Coordinates
chr6:22926449-22927383:-
Coord C1 exon
chr6:22927060-22927383
Coord A exon
chr6:22926827-22926965
Coord C2 exon
chr6:22926449-22926678
Length
139 bp
Sequences
Splice sites
3' ss Seq
CGTGGCTGTGTGTCCCACAGGTG
3' ss Score
12.53
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGCAATCCCACCATGCCGCCGCTCGCTGTCCTGCTGCTTGCCCTGGCCCTGCTCTGTGCCTGGAGGCTGTCGTACAGTCAGGGTCCCACGGGGACGGGGACGGGGCGGCCGCGGAGCCTTCCAGCCCTGCCGCTGGTGGGGAGCCTGCTGCAGCTGGCCGGGCACCCGCAGCTCCACCTGCGGCTCTGGCGCCTGCAGGGCCGCTACGGCAGCCTCTACGGGCTCTGGATGGGCTCCCACTACGTGGTGGTGGTCAACAGCTACCAGCACGCCCGGGAGGTGCTGCTGAAGAAGGGGAAGGCTTTCGCCGGACGGCCTCGCACC
Seq A exon
GTGACCACGGACCTACTGTCCCGCGGGGGAAAGGACATCGCCTTTGCCAGCTACGGTCCCCTCTGGAAGTTCCAGCGCAAACTGGTGCATGCTGCCCTCTCCATGTTTGGGGAGGGCTCAGTCGCCCTGGAGAAGATCA
Seq C2 exon
TCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(15.3=68.3)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(16.4=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAAGGGGAAGGCTTT
R:
GATGTCCACCAGGCTCTCCTT
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]