Special

GgaEX6040824 @ galGal3

Exon Skipping

Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24819540-24820474:-
Coord C1 exon
chr6:24820151-24820474
Coord A exon
chr6:24819918-24820056
Coord C2 exon
chr6:24819540-24819775
Length
139 bp
Sequences
Splice sites
3' ss Seq
CGTGGCTGTGTGTCCCACAGGTG
3' ss Score
12.53
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGCAATCCCACCATGCCGCCGCTCGCTGTCCTGCTGCTTGCCCTGGCCCTGCTCTGTGCCTGGAGGCTGTCGTACAGTCAGGGTCCCACGGGGACGGGGACGGGGCGGCCGCGGAGCCTTCCAGCCCTGCCGCTGGTGGGGAGCCTGCTGCAGCTGGCCGGGCACCCGCAGCTCCACCTGCGGCTCTGGCGCCTGCAGGGCCGCTACGGCAGCCTCTACGGGCTCTGGATGGGCTCCCACTACGTGGTGGTGGTCAACAGCTACCAGCACGCCCGGGAGGTGCTGCTGAAGAAGGGGAAGGCTTTCGCCGGACGGCCTCGCACC
Seq A exon
GTGACCACGGACCTACTGTCCCGCGGGGGAAAGGACATCGCCTTTGCCAGCTACGGTCCCCTCTGGAAGTTCCAGCGCAAACTGGTGCATGCTGCCCTCTCCATGTTTGGGGAGGGCTCAGTCGCCCTGGAGAAGATCA
Seq C2 exon
CCAAAGTCTGCCGGGAGGCCGCATCCCTGTGTGAGACGCTGGGTGCTGCGCAGGATATGGCCCTAGACATGGCCCCGGAGCTCACACGGGCCGTCACCAATGTGGTCTGCTCCCTCTGCTTCAACTCCTCCTACCGACGCGGGGACCCCGAGTTCGAGGCCATGCTGGAGTACAGCCAGGGCATTGTGGACACCGTGGCCAAGGAGAGCCTGGTGGACATCTTCCCCTGGCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121-'0-1,'0-0,1-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0006717=p450=PU(15.2=65.7)
A:
PF0006717=p450=FE(9.9=100)
C2:
PF0006717=p450=FE(16.7=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGGGGAAGGCTTTCGC
R:
GATGTCCACCAGGCTCTCCTT
Band lengths:
258-397
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]