BtaEX6100482 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014335 | CYP17A1
Description
Bos taurus cytochrome P450, subfamily XVII (CYP17A1), mRNA. [Source:RefSeq mRNA;Acc:NM_174304]
Coordinates
chr26:23695943-23697136:-
Coord C1 exon
chr26:23697050-23697136
Coord A exon
chr26:23696432-23696647
Coord C2 exon
chr26:23695943-23696112
Length
216 bp
Sequences
Splice sites
3' ss Seq
CCCCAATCTCACCCAACCAGGAG
3' ss Score
5.76
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
ATTTTCCCCAGCAAAGCCATGGAAAAGATGAAGGGTTGTGTTCAAATGCGAAATGAATTGCTGAATGAAATCCTTGAAAAATGTCAG
Seq A exon
GAGAACTTCAGCAGTGATTCCATCACTAACTTGCTGCACATACTGATCCAAGCCAAGGTGAATGCAGACAATAACAATGCTGGCCCAGACCAGGATTCAAAGCTGCTTTCAAATAGACACATGCTTGCTACCATAGGGGACATCTTCGGGGCTGGTGTAGAGACCACCACGTCTGTGATAAAGTGGATCGTGGCCTACCTGCTACACCATCCTTCA
Seq C2 exon
TTGAAGAAGAGGATCCAGGATGACATTGACCAGATTATAGGTTTCAATCGCACCCCAACCATCAGTGACCGGAACCGCCTTGTCCTGCTGGAGGCGACCATCAGAGAAGTGCTCCGAATCCGGCCTGTGGCCCCTACGCTGATCCCCCACAAGGCTGTCATTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014335-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=FE(15.2=100)
C2:
PF0006717=p450=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCCCCAGCAAAGCCATGG
R:
AGTCAATGACAGCCTTGTGGG
Band lengths:
252-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]