DreEX6061644 @ danRer10
Exon Skipping
Gene
ENSDARG00000033566 | cyp17a1
Description
cytochrome P450, family 17, subfamily A, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-040213-2]
Coordinates
chr13:28473984-28476393:-
Coord C1 exon
chr13:28476307-28476393
Coord A exon
chr13:28474258-28474467
Coord C2 exon
chr13:28473984-28474153
Length
210 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTCTCCATCTACAGGTG
3' ss Score
12.46
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTTTCCCAAATAAAGACCTCAGAATCCTAAGACAATGCATTTCCATCAGAGATAAACTGCTTCAGAAGAAATATGAGGAACACAAG
Seq A exon
GTGACCTACAGTGATAACGTGCAGCGGGATCTCCTGGATGCTCTTCTGAGGGCGAAACGCAGCTCAGAAAACAATAACAGCAGCACTCGTGATGTCGGTTTAACTGAAGATCATGTGCTCATGACGGTGGGGGACATTTTTGGGGCTGGGGTGGAAACCACTACTACTGTACTCAAATGGTCTATAGCTTACCTCGTCCACAATCCACAG
Seq C2 exon
GTTCAGAGAAAGATTCAAGAGGAGCTCGACAGTAAGATTGGGAAAGAAAGACACCCTCAGCTCAGCGACAGGGGGAATCTACCTTATCTAGAGGCCACTATCAGAGAAGTGCTGAGGATTCGACCTGTTTCTCCGCTCCTCATCCCTCATGTGGCGCTGCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033566-'4-5,'4-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.114 C2=0.211
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=FE(14.9=100)
C2:
PF0006717=p450=FE(12.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCCAAATAAAGACCTCAGAATCC
R:
GAGTCCTGCAGCGCCACAT
Band lengths:
252-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]