MmuEX6033372 @ mm9
Exon Skipping
Gene
ENSMUSG00000003555 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88586]
Coordinates
chr19:46743162-46744298:-
Coord C1 exon
chr19:46744212-46744298
Coord A exon
chr19:46743636-46743851
Coord C2 exon
chr19:46743162-46743331
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTCTCTCACCCCAGGAG
3' ss Score
10.33
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTTTTCCCAATAAAAACTTGGAAATGATAAAGGAACACACTAAAATTCGAGAAAAAACACTGGTTGAAATGTTTGAAAAATGCAAG
Seq A exon
GAGAAATTCAATAGTGAATCTCTCTCCAGCCTGACAGACATTCTGATACAAGCCAAGATGAATGCAGAAAATAATAACACTGGGGAAGGCCAGGACCCAAGTGTGTTCTCAGATAAGCATATCCTTGTCACGGTGGGAGACATCTTTGGGGCAGGCATAGAGACAACTAGCTCTGTGCTGAACTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
Seq C2 exon
GTGAAGAGGAAGATCCAAAAGGAGATTGACCAGTATGTAGGCTTCAGTCGAACACCGTCTTTCAATGACCGGACTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTTCGTATCAGGCCGGTGGCCCCCTTGCTCATCCCACACAAGGCTAACATTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003555-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=FE(15.3=100)
C2:
PF0006717=p450=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTGGAAATGATAAAGGAACAC
R:
CTGGAGTCAATGTTAGCCTTGTGT
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: