GgaEX0011645 @ galGal3
Exon Skipping
Gene
ENSGALG00000008121 | F1NYI7_CHICK
Description
NA
Coordinates
chr6:24818663-24819430:-
Coord C1 exon
chr6:24819344-24819430
Coord A exon
chr6:24819037-24819246
Coord C2 exon
chr6:24818663-24818832
Length
210 bp
Sequences
Splice sites
3' ss Seq
TCACATGTGTCCCCTGGCAGGAA
3' ss Score
9.37
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
ATCTTCCCCAACAGGGACTTGGCTCTGCTGAAGCGATGCCTGAAGGTCAGGGACCAGCTGCTCCAGCAGAAGTTCACTGAACACAAG
Seq A exon
GAAGCATTCTGTGGGGACACTGTGAGGGACCTGATGGATGCCCTCCTGCAAGTGAGGCTCAATGCTGAGAACAGCAGCCCTCTTGAGCCAGGTCTGGAGCTGACAGATGACCACCTCCTCATGACGGTGGGGGACATCTTTGGGGCTGGCGTGGAGACCACCACCACTGTGCTCAAGTGGGCTGTGCTCTACCTGCTCCACTACCCCGAG
Seq C2 exon
GTCCAGAAGAAGATCCAGGAGGAGATGGACCAGAAGATTGGCCTGGCACGTCACCCCCACCTCAGTGACCGCCCACTGCTGCCCTACCTGGAGGCTACCATCAGCGAGGTGCTGCGCATCCGGCCCGTGTCCCCCCTGCTCATCCCACATGTGTCCCTTGCTGACACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008121-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.035
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=FE(14.8=100)
C2:
PF0006717=p450=FE(12.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGGGACTTGGCTCTGC
R:
TGTCAGCAAGGGACACATGTG
Band lengths:
245-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]