HsaEX0018243 @ hg38
Exon Skipping
Gene
ENSG00000148795 | CYP17A1
Description
cytochrome P450 family 17 subfamily A member 1 [Source:HGNC Symbol;Acc:HGNC:2593]
Coordinates
chr10:102832511-102834122:-
Coord C1 exon
chr10:102834036-102834122
Coord A exon
chr10:102832993-102833208
Coord C2 exon
chr10:102832511-102832680
Length
216 bp
Sequences
Splice sites
3' ss Seq
CCCAACCTCACCCAACCCAGGAG
3' ss Score
3.36
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
ATTTTCCCCAACAAAACCCTGGAAAAATTAAAGAGCCATGTTAAAATACGAAATGATCTGCTGAATAAAATACTTGAAAATTACAAG
Seq A exon
GAGAAATTCCGGAGTGACTCTATCACCAACATGCTGGACACACTGATGCAAGCCAAGATGAACTCAGATAATGGCAATGCTGGCCCAGATCAAGACTCAGAGCTGCTTTCAGATAACCACATTCTCACCACCATAGGGGACATCTTTGGGGCTGGCGTGGAGACCACCACCTCTGTGGTTAAATGGACCCTGGCCTTCCTGCTGCACAATCCTCAG
Seq C2 exon
GTGAAGAAGAAGCTCTACGAGGAGATTGACCAGAATGTGGGTTTCAGCCGCACACCAACTATCAGTGACCGTAACCGTCTCCTCCTGCTGGAGGCCACCATCCGAGAGGTGCTTCGCCTCAGGCCCGTGGCCCCTATGCTCATCCCCCACAAGGCCAACGTTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148795_MULTIEX1-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.222 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=PD(9.9=11.1),PF0006717=p450=PU(29.3=98.6)
C2:
PF0006717=p450=PD(0.5=1.8),PF0006717=p450=FE(32.6=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCAACAAAACCCTGGAAA
R:
CTGGAGTCAACGTTGGCCTTG
Band lengths:
253-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development