RnoEX6007631 @ rn6
Exon Skipping
Gene
ENSRNOG00000020035 | Cyp17a1
Description
cytochrome P450, family 17, subfamily a, polypeptide 1 [Source:RGD Symbol;Acc:2456]
Coordinates
chr1:266423745-266424849:-
Coord C1 exon
chr1:266424763-266424849
Coord A exon
chr1:266424223-266424438
Coord C2 exon
chr1:266423745-266423914
Length
216 bp
Sequences
Splice sites
3' ss Seq
CTCACTGTCTCTCTCCATAGGAG
3' ss Score
13.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATTTTTCCCAACAAAGGCTTGGAGGTGATAAAGGGTTATGCCAAAGTTCGAAATGAAGTACTGACTGGAATATTTGAAAAGTGCAGG
Seq A exon
GAGAAGTTCGACAGTCAGTCTATCTCCAGCCTGACGGACATTCTGATTCAAGCCAAGATGAATTCAGACAACAACAACAGCTGTGAAGGCCGGGACCCAGATGTGTTTTCAGATAGGCACATCCTTGCCACGGTGGGAGACATCTTTGGGGCGGGCATAGAGACAACTACCACTGTGCTCAAGTGGATCCTGGCTTTCCTGGTGCACAATCCTGAG
Seq C2 exon
GTGAAGAAGAAGATCCAAAAGGAGATTGACCAGTACGTAGGCTTCAGCCGAACACCAACTTTCAATGACCGGTCTCACCTCCTCATGCTGGAGGCCACTATCCGAGAAGTGCTGCGTATCAGGCCGGTGGCTCCCATGCTCATCCCCCACAAGGCTAACGTTGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020035-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.069 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(6.0=100)
A:
PF0006717=p450=FE(15.3=100)
C2:
PF0006717=p450=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCAACAAAGGCTTGGAGG
R:
TGGAGTCAACGTTAGCCTTGTG
Band lengths:
252-468
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]