BtaEX6104007 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005903 | LRP5
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N1K8]
Coordinates
chr29:46533593-46538155:+
Coord C1 exon
chr29:46533593-46533882
Coord A exon
chr29:46536500-46536726
Coord C2 exon
chr29:46537971-46538155
Length
227 bp
Sequences
Splice sites
3' ss Seq
CTCCTTCTCCCCACTCCCAGACC
3' ss Score
9.51
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GAACCAACCCGTGTGCGGACAGGAATGGGGGCTGCAGCCACCTGTGCTTCTTCACGCCCCGTGCCACCAAGTGCGGCTGCCCCATCGGCCTGGAGCTGCTGAGCGACATGAAGACCTGCATCGTGCCCGAGGCCTTCCTGGTGTTCACCAGCCGGGCCGCCATCCACCGGATCTCCCTGGACACCAACAACAACGATGTGGCCATCCCGCTCACGGGCGTCAAGGAGGCGTCCGCCCTGGACTTCGATGTGTCCAACAATCACATCTACTGGACCGACGTCAGCCTGAAG
Seq A exon
ACCATCAGCCGGGCCTTCATGAATGGGAGCTCCGTGGAGCACGTGATCGAGTTTGGCCTCGACTACCCGGAAGGCATGGCCGTTGATTGGATGGGCAAGAACCTCTACTGGGCAGACACCGGGACCAACAGGATTGAAGTGGCCCGGCTGGACGGGCAGTTCCGGCAGGTCCTCGTGTGGAGGGATCTAGACAACCCGCGGTCGCTGGCCCTGGACCCCACCAAAGG
Seq C2 exon
CTACATCTATTGGACAGAGTGGGGTGGCAAGCCCAGGATCGTGCGGGCCTTCATGGATGGGACCAACTGCATGACGCTGGTGGACAAGGTGGGCCGGGCCAATGACCTCACCATCGACTACGCTGACCAGCGTCTCTACTGGACGGACCTGGACACCAACATGATCGAGTCGTCCAACATGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005903-'14-17,'14-16,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=37.1),PF0005812=Ldl_recept_b=PU(24.4=10.3)
A:
PF0005812=Ldl_recept_b=PD(70.7=38.2),PF0005812=Ldl_recept_b=WD(100=53.9),PF0005812=Ldl_recept_b=PU(0.1=0.0)
C2:
PF0005812=Ldl_recept_b=WD(100=65.1),PF0005812=Ldl_recept_b=PU(51.4=30.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGACACCAACAACAACGA
R:
CAGCATGTTGGACGACTCGAT
Band lengths:
299-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]